SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
RNA-Seq: Detection, annotation and visualization of alternative splicing from RNA-Seq Newsbot! Literature Watch 0 01-10-2012 05:00 AM
Alternative splicing with RNA Seq slny Bioinformatics 1 06-02-2011 06:44 AM
Test datasets for judging RNA-seq alternative splicing detection tools acnoll RNA Sequencing 0 02-10-2010 08:33 AM
Alternative splicing detection using RNA-seq jiwu2573 Bioinformatics 9 02-05-2010 08:56 PM
A Statistical Method for the Detection of Alternative Splicing Using RNA-Seq krobison Literature Watch 0 01-11-2010 11:09 AM

Reply
 
Thread Tools
Old 01-24-2010, 09:06 PM   #1
jiwu2573
Member
 
Location: Australia

Join Date: Jun 2009
Posts: 34
Question Alternative splicing detection using RNA-seq

I used Bowtie and Tophat to align my reads and to identify splice junctions but now i would like to be able to compare my two conditions.

I am looking for something that uses mRNA-seq to identify novel splicing events in a given sample or, if multiple samples are available, identifies differential splicing events between those samples.

Has anyone come across some software that can do these things?

Thanks in advance.
jiwu2573 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:07 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO