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  • Tool for viral metagenome assembly with extremely low coverage?

    Hello!
    I am studying the interaction of bacteria with plasmids and bacteriophages. I have faced with the following problem. I have 30-bp reads of plasmids and phages, that infect a bacteria
    (genome of host bacteria was eliminated). I need to assemble at least a very short contigs, so I could send them to the Blast. The problem is that some genomes are presented with a very low coverage, but I would not want to throw them out of my analysis.
    I need a not picky assembler, which could cope with this task. Could you advise me something suitable?
    Thanks in advance.

  • #2
    Hi, for Metagenomics Sequencing, you can visit this site.

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