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Old 10-10-2013, 08:07 AM   #1
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Location: Houston

Join Date: Jun 2011
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Default Cufflinks didn't output FPKM value for single exon genes

Hi, Guys
I recently found that for most of the single exon transcripts, cufflinks seems not calculate a FPKM value for them. Has anybody notice this before? Or does anyone has a clue about how to deal with it? By the way, for 'single exon transcripts' I mean the single exon transcripts assembled by cufflinks itself. Not some RefGene.
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