I want to download seqs of a pfam, build an hmm, and search a genome for the hmm.
The wellcome sanger site is a bit confusing to me. I can see there are 250 or so sequences total in the pfam, but it also says there are 4 different architectures. What does this mean? 4 "types" in this pfam? Does this mean I want to hmm search 4 times? Which sequences map to which architectures?
Any help appreciated.
The wellcome sanger site is a bit confusing to me. I can see there are 250 or so sequences total in the pfam, but it also says there are 4 different architectures. What does this mean? 4 "types" in this pfam? Does this mean I want to hmm search 4 times? Which sequences map to which architectures?
Any help appreciated.
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