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  • samtools: parse error in SAM to BAM

    Hi

    I am trying to convert .sam file to a .bam file using the following script:-

    samtools view -bT Ref_HighCov_B07.fa Reads.sam > Reads.bam

    And the error I get is this....

    [sam_header_read2] 116 sequences loaded.
    [sam_read1] reference '' is recognized as '*'.
    Parse error at line 1: missing colon in auxiliary data


    Kindly help

    Regards
    Ankur

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