Hi, I am attempting to get sift.jcvi.org to work on our own local machine as a web page, but first let's just talk about getting it to work on the command line.
I went through the README and attempted to run SIFT with their test files like so:
$ bin/SIFT_for_submitting_fasta_seq.csh test/lacI.fasta /projects/cgl/data/swiss.uni test/lacI.subst 2.75
and the result is this:
tail is lacI.fasta
query is /projects/cgl/projects/sift/sift4.0.3/tmp/lacI.fasta.query
cp: cannot access /projects/cgl/projects/sift/sift4.0.3/tmp/lacI.fasta.query
/projects/cgl/misc/biotools/blast-2.2.10/bin/blastpgp: Invalid argument
exiting because stauts not equal to 0
/projects/cgl/projects/sift/sift4.0.3/bin/info_on_seqs: Invalid argument
Output in /projects/cgl/projects/sift/sift4.0.3/tmp/lacI.SIFTprediction
I have searched for what the cp: line might mean, but I haven't gotten anywhere. Any suggestions would be appreciated.
Emily
I went through the README and attempted to run SIFT with their test files like so:
$ bin/SIFT_for_submitting_fasta_seq.csh test/lacI.fasta /projects/cgl/data/swiss.uni test/lacI.subst 2.75
and the result is this:
tail is lacI.fasta
query is /projects/cgl/projects/sift/sift4.0.3/tmp/lacI.fasta.query
cp: cannot access /projects/cgl/projects/sift/sift4.0.3/tmp/lacI.fasta.query
/projects/cgl/misc/biotools/blast-2.2.10/bin/blastpgp: Invalid argument
exiting because stauts not equal to 0
/projects/cgl/projects/sift/sift4.0.3/bin/info_on_seqs: Invalid argument
Output in /projects/cgl/projects/sift/sift4.0.3/tmp/lacI.SIFTprediction
I have searched for what the cp: line might mean, but I haven't gotten anywhere. Any suggestions would be appreciated.
Emily
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