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  • MAQ Scores & Quantify maq alignments?

    Hello,

    Is there a way to discern how well reads are aligning to a reference assembly using the mapping quality scores?

    Thanks,
    AnamikaDarwin

  • #2
    maq and bwt

    hello,is any one help me for learning better maq and bwt alighnment. i want study about it ,but cant finde good sorce for it..

    Comment


    • #3
      They have published papers and freely downloadable source code...

      Comment


      • #4
        do you have a book or ppt about it???

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        • #5
          There won't be a book on things like this. Perhaps you can find a ppt file somewhere (try slideshare).

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          • #6
            Wikipedia (hopefully accessible from Iran) has good explanation of Burrows-Wheeler transformation: https://en.wikipedia.org/wiki/Burrow...eler_transform

            Here is a useful deck of slides about alignments: http://evomicsorg.wpengine.netdna-cd...cture-2-v3.pdf

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