HI,
I am working a flatworm for which the reference genome is not well characterized. I found the refernece trancriptome for my species from internet and I mapped my reads to refernce trancriptome. Now I want count the reads but I couldnt find the GFF file for this trancriptome. How can I count the reads without GFF file? is it possible genrate a GFF file for this trancriptome.
Kindly guide me
I am working a flatworm for which the reference genome is not well characterized. I found the refernece trancriptome for my species from internet and I mapped my reads to refernce trancriptome. Now I want count the reads but I couldnt find the GFF file for this trancriptome. How can I count the reads without GFF file? is it possible genrate a GFF file for this trancriptome.
Kindly guide me
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