Hi all,
My query is 'should bowtie 2 produce a separate SAM file for each pair of input reads from different samples?'
When specifying -1 and -2 and comma separated lists of input file for read 1 and 2, which are in the correct order and represent reads from different individuals - shouldn't a sam file be produced for each individual sample alignment?
Many thanks
J
My query is 'should bowtie 2 produce a separate SAM file for each pair of input reads from different samples?'
When specifying -1 and -2 and comma separated lists of input file for read 1 and 2, which are in the correct order and represent reads from different individuals - shouldn't a sam file be produced for each individual sample alignment?
Many thanks
J
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