What are the typical runtimes for samtools mpileup? I have been running for 16 hours and so far it is only gotten through chr1, 2 and 3. I have 3 bam files averaging about 42.5 gigs each.
Is there a snp caller with a faster run time? I like samtools, but I can't wait a week for samtools to processes these files.
Is there a snp caller with a faster run time? I like samtools, but I can't wait a week for samtools to processes these files.
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