Hi,
I am new here, glad I find this place.
Am I right that "samtools view -q 1" should remove all bwa will ambiguous alignments ? (since BWA ambiguous alignment should have MAPQ=0)
Thanks.
I am new here, glad I find this place.
Am I right that "samtools view -q 1" should remove all bwa will ambiguous alignments ? (since BWA ambiguous alignment should have MAPQ=0)
Thanks.