|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| De Novo Assembly of a transcriptome | Neil | De novo discovery | 82 | 02-28-2012 09:44 AM |
| de novo transcriptome assembly/RNA-seq | samanta | General | 0 | 08-24-2011 12:07 PM |
| De Novo assembly of a plant transcriptome | raonyguimaraes | RNA Sequencing | 7 | 07-05-2011 01:17 PM |
| De Novo Transcriptome Assembly QC | Noremac | General | 0 | 05-19-2011 11:02 AM |
| de novo transcriptome assembly | Niharika | Introductions | 8 | 02-07-2011 05:29 AM |
 |
|
|
Thread Tools |
12-06-2010, 09:37 PM
|
#1 |
|
Member
Location: China Join Date: Oct 2010
Posts: 22
|
de novo transcriptome assembly
has anybody done de novo transcriptome assembly? are there any tools to do this? which one is better?
|
|
|
|
12-06-2010, 10:46 PM
|
#2 |
|
Member
Location: Singapore Join Date: Jan 2009
Posts: 31
|
on top of my head, you can use trans-abyss.
|
|
|
|
|
12-06-2010, 11:17 PM
|
#3 |
|
Member
Location: China Join Date: Oct 2010
Posts: 22
|
thanks.
i have many RNA-seq data, and the reference is not very good, so i want to generate a new transcriptome assembly. can trans-abyss do this? |
|
|
|
|
12-06-2010, 11:47 PM
|
#4 |
|
Member
Location: Singapore Join Date: Jan 2009
Posts: 31
|
yes they can, but i never use them though so i dont know about the quality. Read about it on their paper "De novo assembly and analysis of RNA-seq data".
|
|
|
|
|
12-06-2010, 11:54 PM
|
#5 |
|
Member
Location: China Join Date: Oct 2010
Posts: 22
|
you are so kind, thanks again.
|
|
|
|
|
| Thread Tools | |
|
|
