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  • Trinotate-signalp

    I am populating the Sqliite database and want to use signalp.out file. I am getting this error

    CMD: echo "pragma journal_mode=memory;
    pragma synchronous=0;
    pragma cache_size=4000000;
    .mode tabs
    .import tmp.signalp_bulk_load.10589 signalp" | sqlite3 Trinotate.sqlite
    memory
    tmp.signalp_bulk_load.10589:6939: INSERT failed: UNIQUE constraint failed: SignalP.query_prot_id
    tmp.signalp_bulk_load.10589:6940: INSERT failed: UNIQUE constraint failed: SignalP.query_prot_id
    tmp.signalp_bulk_load.10589:6941: INSERT failed: UNIQUE constraint failed: SignalP.query_prot_id

  • #2
    It is seems the query protein id is not uniq in you SignalP file.

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