Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
SNP filtering gfmgfm Bioinformatics 8 02-03-2013 10:01 AM
Ideal params for filtering SNP and Indels meher Bioinformatics 1 07-20-2012 01:54 AM
vcftools to annotate SNP rururara Bioinformatics 0 03-31-2011 07:47 AM
SNP filtering related fault in the BWA workflow rmadcf Bioinformatics 0 07-09-2009 07:04 AM
Maq SNP filtering script bug? qiudao Bioinformatics 9 03-03-2009 01:48 PM

Thread Tools
Old 08-10-2012, 04:05 AM   #1
Junior Member
Location: Australia

Join Date: Sep 2011
Posts: 6
Question SNP filtering with vcftools

Hi everyone,

I have called SNPs using SAMtools and now wish to use vcftools to filter my SNPs. I need to keep SNPs with at least 100 bp flanking both sides for primer design (i.e. no other SNPs present in 100 bp flanking region). Do you have any idea of how to get this work?

Any suggestion would be appreciated.

tnguyen is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 09:06 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2022, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO