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Old 02-03-2014, 03:56 AM   #1
mboursnell
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Default Comparing whole genome sequences

Does anyone know of good software to compare two whole genome mammalian sequences to each other?
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Old 02-03-2014, 04:11 AM   #2
mastal
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Have you tried Blast or BLAT?
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Old 02-03-2014, 04:20 AM   #3
GenoMax
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LASTZ (http://www.bx.psu.edu/~rsharris/lastz/) is a good option to look into.
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Old 02-03-2014, 04:23 AM   #4
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Quote:
Originally Posted by mastal View Post
Have you tried Blast or BLAT?

Can BLAST handle whole genomes?
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