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  • Failed to View .BAM file in Artemis

    I always get this error when I view .BAM file in Artemis. I create the index file in the same folder. The error message I got : .bam.bai is older than .bam file .
    I dont have any idea about this. Anyone experience with this?

    Thanks!

  • #2
    Originally posted by rururara View Post
    I always get this error when I view .BAM file in Artemis. I create the index file in the same folder. The error message I got : .bam.bai is older than .bam file .
    I dont have any idea about this. Anyone experience with this?

    Thanks!
    Hi, I came across the same problem... have you got the solution? Is it because the Java version is old?

    Comment


    • #3
      Hai nivea.
      Yup. I already solved the problem. I dont think it's because of Java version.
      It's depends on our BAM file. I tried to optimize back my alignment. Then I took out the uniquely mapping reads from the alignment. After that I formatted the BAM file properly. Make sure you have sorted your bam file and index your bam file. In one folder, should have these three files : .bam, sorted.bam, sorted.bam.bai.

      Good luck!

      Comment


      • #4
        Hi rururara,

        Thanks for reply. I solved the problem too, just named the index file in a wrong way

        Comment

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