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Old 11-09-2009, 08:39 AM   #1
Layla
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Location: London

Join Date: Sep 2008
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Default hg18 or hg19

Does anybody know the difference between the following files for Bowtie?
File: h_sapiens_37_asm.ebwt.zip (27-08-09) and
File: h_sapiens_asm.ebwt.zip (18-02-09)
Files found from:
http://bowtie-bio.sourceforge.net/md5s.shtml

Is it a difference in the genomes or something else?
I want to be using hg18 version of the genome

Cheers

L
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Old 11-09-2009, 11:38 PM   #2
simonandrews
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Location: Babraham Inst, Cambridge, UK

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Default

If you look at the 'pre-built indexes' panel on the right of that page you can see what the different files are.

The h_sapiens_37 comes from the new GRCh37 assembly from earlier this year. The h_sapiens_asm is the older NCBI36 assembly, which would correspond to hg18.
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