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Old 10-27-2010, 08:42 AM   #1
steven
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Default Human Body Map data?

Hi,
do you know where to find data from illumina's human body map project?
I don't think there is anything publicly available, but just in case..
thanks,
s.
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Old 11-26-2010, 05:01 AM   #2
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They are incorporated in the IGV (Integrative Genomics Viewer).
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Old 11-27-2010, 11:59 AM   #3
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Quote:
Originally Posted by yinshe View Post
They are incorporated in the IGV (Integrative Genomics Viewer).
Really! Do you have a link or resource to help explain that more?
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Old 11-28-2010, 07:53 AM   #4
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Here is the link:
http://www.broadinstitute.org/igv/
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Old 11-28-2010, 09:57 AM   #5
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Here is the link:

http://www.broadinstitute.org/igv/

The data is under hg18 genome.
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Old 11-29-2010, 10:18 AM   #6
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Quote:
Originally Posted by yinshe View Post
They are incorporated in the IGV (Integrative Genomics Viewer).
All I could find is hosted genomes: http://www.broadinstitute.org/igv/Genomes
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Old 11-29-2010, 10:31 PM   #7
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I donīt know where is talking about this in the web page. Please try to install it in your computer and keep your computer online. Using human hg18 genome on the upper left. From "File", select "load from server", a new window will pop up. The last option is "Body Map 2.0".
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Old 11-30-2010, 08:15 AM   #8
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OK, i got it. Yinshe is right, you can download it from the IGV interface.
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Old 12-06-2010, 09:12 AM   #9
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Quote:
Originally Posted by yinshe View Post
I donīt know where is talking about this in the web page. Please try to install it in your computer and keep your computer online. Using human hg18 genome on the upper left. From "File", select "load from server", a new window will pop up. The last option is "Body Map 2.0".
Oh thats what you meant. I can find it now. Thanks!
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Old 01-20-2011, 03:13 AM   #10
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It can also be downloaded without IGV:
/

-- update: not any more

Last edited by steven; 08-16-2011 at 09:56 AM. Reason: That url should not be disclosed
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Old 08-15-2011, 09:17 AM   #11
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Are there anyway we can download raw read or the raw alignment not the graphical one?
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Old 08-16-2011, 06:26 AM   #12
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Hi, I think you might be able to get them from Ensemble. We (the IGV team) do not have permission to redistribute the BAM files. You could also ask Illumina.
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Old 08-16-2011, 06:33 AM   #13
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thank you very much Jim.
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Old 08-16-2011, 09:45 AM   #14
steven
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Quote:
Originally Posted by Jim Robinson View Post
Hi, I think you might be able to get them from Ensemble. We (the IGV team) do not have permission to redistribute the BAM files. You could also ask Illumina.
Sorry Jim for having posted that information, I did not know I was not supposed to. I hope no harm was done.
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Old 08-16-2011, 09:52 AM   #15
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I think it should be okay Steven. Your link is blocked for me and probably for others. I think you can remove that post to secure that no one can find the way to access it.
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Old 08-16-2011, 12:00 PM   #16
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Hi Steven, no problem and no harm done, I disabled the link.

If anyone from Illumina is following this thread it would be a great service to the community if you could post instructions for obtaining the Body Map data, its a frequently asked question.
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Old 08-16-2011, 06:02 PM   #17
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The data has been put on GEO http://www.ncbi.nlm.nih.gov/projects...i?acc=GSE30611
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Old 02-27-2013, 07:41 AM   #18
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You can also download all data (SRA, FastQ) here E-MTAB-513 http://www.ebi.ac.uk/arrayexpress/ex...nts/E-MTAB-513
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