Repeat masking

m4merg · 11-21-2014, 03:16 AM

Hello!

Does anyone knows where can i find senseless regions in BED file format. I know where masked genomes can be downloaded, but i need only regions that should be masked in BED format. Im interested in hg19.

Thanks in advance!

GenoMax · 11-21-2014, 04:23 AM

Should be able to get that from UCSC Table browser. Select "hg19" then "repeats" under group and then an appropriate track. Export the data in BED format.

m4merg · 11-21-2014, 04:31 AM

Quote:

Originally Posted by GenoMax

Should be able to get that from UCSC Table browser. Select "hg19" then "repeats" under group and then an appropriate track. Export the data in BED format.

Thanks a lot!

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11-21-2014, 03:16 AM	#1
m4merg Member Location: Russia Join Date: Jul 2014 Posts: 21	Repeat masking Hello! Does anyone knows where can i find senseless regions in BED file format. I know where masked genomes can be downloaded, but i need only regions that should be masked in BED format. Im interested in hg19. Thanks in advance!

11-21-2014, 04:23 AM	#2
GenoMax Senior Member Location: East Coast USA Join Date: Feb 2008 Posts: 7,143	Should be able to get that from UCSC Table browser. Select "hg19" then "repeats" under group and then an appropriate track. Export the data in BED format.