small RNA from MAQC RNA samples?

scooter · 05-21-2010, 06:13 AM

Does anyone know where I can get access to small RNA/miRNA datasets from the Human Brain Reference RNA (Ambion) and the Universal Human Reference RNA (Stratagene) samples?

I have searched several sources and even googled it and all I find is Whole Transcriptome datasets, but so far I am unable to find any small RNA datasets.

cyriac · 05-22-2010, 11:41 AM

Sanger's miRBase has quite a few, but I'm not sure if they're from Ambion and Stratagene. You gotta read the FASTA descriptions.
http://www.mirbase.org/cgi-bin/mirna_summary.pl?org=hsa

yjhua2110 · 05-24-2010, 03:08 AM

You can browse/acess to small RNA/miRNA datasets from different tissues and cell lines of different organisms at deepBase database ( http://deepbase.sysu.edu.cn/ ), which we have developed to map, store, retrieve, annotate, integrate and visualize deep sequencing-derived small RNAs, and facilitate transcriptomic research and the discovery of novel ncRNAs.

deepBase is available at: http://deepbase.sysu.edu.cn/

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05-21-2010, 06:13 AM	#1
scooter Member Location: USA Join Date: Feb 2010 Posts: 29	small RNA from MAQC RNA samples? Does anyone know where I can get access to small RNA/miRNA datasets from the Human Brain Reference RNA (Ambion) and the Universal Human Reference RNA (Stratagene) samples? I have searched several sources and even googled it and all I find is Whole Transcriptome datasets, but so far I am unable to find any small RNA datasets.

05-24-2010, 03:08 AM	#3
yjhua2110 Member Location: china Join Date: Nov 2009 Posts: 67	You can browse/acess to small RNA/miRNA datasets from different tissues and cell lines of different organisms at deepBase database ( http://deepbase.sysu.edu.cn/ ), which we have developed to map, store, retrieve, annotate, integrate and visualize deep sequencing-derived small RNAs, and facilitate transcriptomic research and the discovery of novel ncRNAs. deepBase is available at: http://deepbase.sysu.edu.cn/ Last edited by yjhua2110; 05-24-2010 at 03:12 AM.

05-22-2010, 11:41 AM	#2
cyriac Junior Member Location: Saint Louis MO Join Date: May 2010 Posts: 3	Sanger's miRBase has quite a few, but I'm not sure if they're from Ambion and Stratagene. You gotta read the FASTA descriptions. http://www.mirbase.org/cgi-bin/mirna_summary.pl?org=hsa