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Old 05-21-2010, 06:13 AM   #1
scooter
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Default small RNA from MAQC RNA samples?

Does anyone know where I can get access to small RNA/miRNA datasets from the Human Brain Reference RNA (Ambion) and the Universal Human Reference RNA (Stratagene) samples?

I have searched several sources and even googled it and all I find is Whole Transcriptome datasets, but so far I am unable to find any small RNA datasets.
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Old 05-22-2010, 11:41 AM   #2
cyriac
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Sanger's miRBase has quite a few, but I'm not sure if they're from Ambion and Stratagene. You gotta read the FASTA descriptions.
http://www.mirbase.org/cgi-bin/mirna_summary.pl?org=hsa
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Old 05-24-2010, 03:08 AM   #3
yjhua2110
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You can browse/acess to small RNA/miRNA datasets from different tissues and cell lines of different organisms at deepBase database ( http://deepbase.sysu.edu.cn/ ), which we have developed to map, store, retrieve, annotate, integrate and visualize deep sequencing-derived small RNAs, and facilitate transcriptomic research and the discovery of novel ncRNAs.

deepBase is available at: http://deepbase.sysu.edu.cn/

Last edited by yjhua2110; 05-24-2010 at 03:12 AM.
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