Cufflinks on Solaris (compile error)

luxmare · 06-03-2010, 06:25 PM

I want to install Cufflinks (the latest version 0.8.2) on Solaris 10 server.

I've already installed Boost C++ libraries Version 1.43.0 on the system. But I faced to the following errors when I compiled Cufflinks.

Does anyone known how to solve this problem? Cuffliks can work on Solaris system?

---- A part of error messages ----

bash$ make
all-recursive
make[1]: Entering directory `/home/user/Cufflinks/cufflinks-0.8.2'
Making all in src
make[2]: Entering directory `/home/user/Cufflinks/cufflinks-0.8.2/src'
if g++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -Wall -Wno-strict-aliasing -g -gdwarf-2 -m64 -O3 -DNDEBUG -I/home/user/Boost/boost_1_43_0/include -MT clustering.o -MD -MP -MF ".deps/clustering.Tpo" -c -o clustering.o clustering.cpp; \
then mv -f ".deps/clustering.Tpo" ".deps/clustering.Po"; else rm -f ".deps/clustering.Tpo"; exit 1; fi
In file included from /home/user/Boost/boost_1_43_0/include/boost/thread/detail/platform.hpp:17,
from /home/user/Boost/boost_1_43_0/include/boost/thread/thread.hpp:12,
from /home/user/Boost/boost_1_43_0/include/boost/thread.hpp:13,
from scaffolds.h:22,
from abundances.h:21,
from clustering.h:32,
from clustering.cpp:10:
/home/user/Boost/boost_1_43_0/include/boost/config/requires_threads.hpp:47:5: #error "Compiler threading support is not turned on. Please set the correct command line options for threading: -pthread (Linux), -pthreads (Solaris) or -mthreads (Mingw32)”

--- skip ---

FYI:

Boost C++ libraries Version 1.43.0 was installed in /home/user/Boost/boost_1_43_0/ by using the following command.

bash$ bjam --prefix=/home/user/Boost/boost_1_43_0/ toolset=gcc link=static runtime-link=static stage install

After that I also configured Cufflinks like this

bash$ ./configure --prefix=/home/user/Cufflinks/ --with-boost=/home/user/Boost/boost_1_43_0/

dawe · 06-04-2010, 01:00 AM

Hi, I was trying to install on Nexenta, apparently I have a plenty of other errors not related to threads (system #include and #define instead).
BTW, I've built boost like this

Code:

$ ./bootstrap.sh --prefix=/usr/local
$ ./bjam --toolset=gcc --build-dir=~/buildboost stage
$ sudo ./bjam install

It skips 6 modules (I think python ones).

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06-03-2010, 06:25 PM	#1
luxmare Member Location: Japan Join Date: Feb 2009 Posts: 10	Cufflinks on Solaris (compile error) I want to install Cufflinks (the latest version 0.8.2) on Solaris 10 server. I've already installed Boost C++ libraries Version 1.43.0 on the system. But I faced to the following errors when I compiled Cufflinks. Does anyone known how to solve this problem? Cuffliks can work on Solaris system? ---- A part of error messages ---- bash$ make all-recursive make[1]: Entering directory `/home/user/Cufflinks/cufflinks-0.8.2' Making all in src make[2]: Entering directory `/home/user/Cufflinks/cufflinks-0.8.2/src' if g++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -Wall -Wno-strict-aliasing -g -gdwarf-2 -m64 -O3 -DNDEBUG -I/home/user/Boost/boost_1_43_0/include -MT clustering.o -MD -MP -MF ".deps/clustering.Tpo" -c -o clustering.o clustering.cpp; \ then mv -f ".deps/clustering.Tpo" ".deps/clustering.Po"; else rm -f ".deps/clustering.Tpo"; exit 1; fi In file included from /home/user/Boost/boost_1_43_0/include/boost/thread/detail/platform.hpp:17, from /home/user/Boost/boost_1_43_0/include/boost/thread/thread.hpp:12, from /home/user/Boost/boost_1_43_0/include/boost/thread.hpp:13, from scaffolds.h:22, from abundances.h:21, from clustering.h:32, from clustering.cpp:10: /home/user/Boost/boost_1_43_0/include/boost/config/requires_threads.hpp:47:5: #error "Compiler threading support is not turned on. Please set the correct command line options for threading: -pthread (Linux), -pthreads (Solaris) or -mthreads (Mingw32)” --- skip --- FYI: Boost C++ libraries Version 1.43.0 was installed in /home/user/Boost/boost_1_43_0/ by using the following command. bash$ bjam --prefix=/home/user/Boost/boost_1_43_0/ toolset=gcc link=static runtime-link=static stage install After that I also configured Cufflinks like this bash$ ./configure --prefix=/home/user/Cufflinks/ --with-boost=/home/user/Boost/boost_1_43_0/

06-04-2010, 01:00 AM	#2
dawe Senior Member Location: 45°30'25.22"N / 9°15'53.00"E Join Date: Apr 2009 Posts: 258	Hi, I was trying to install on Nexenta, apparently I have a plenty of other errors not related to threads (system #include and #define instead). BTW, I've built boost like this Code: $ ./bootstrap.sh --prefix=/usr/local $ ./bjam --toolset=gcc --build-dir=~/buildboost stage $ sudo ./bjam install It skips 6 modules (I think python ones).