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12-02-2011, 12:23 PM
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#1 |
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Member
Location: Washington DC Join Date: Sep 2011
Posts: 10
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How to know the CDS positions of each gene
Anyone knows how to get the CDS position of each gene, on HG18?
Note that it is for each gene, instead of each transcript |
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12-03-2011, 05:03 PM
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#2 | |
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Member
Location: Hong Kong Join Date: Oct 2010
Posts: 74
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Quote:
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12-03-2011, 06:55 PM
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#3 |
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Senior Member
Location: San Diego, CA Join Date: May 2010
Posts: 116
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You should be able to get them from the UCSD Genomes browser tables (http://genome.ucsc.edu/cgi-bin/hgTables?command=start).
Alternatively, you can extract the information from the annotations available at the NCBI FTP (ftp://ftp.ncbi.nih.gov/genomes/H_sap...romosomes/gbs/). I should note that those annotations are not for the HG18 version, but the latest release. |
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12-19-2011, 12:29 PM
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#4 |
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Member
Location: Washington DC Join Date: Sep 2011
Posts: 10
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thanks robs
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