SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
stringtie genes abundances bug or problems? skycreative Bioinformatics 0 02-17-2017 05:14 AM
stringtie output has exons instead of transcript annotation liux Bioinformatics 1 07-09-2015 04:39 AM
StringTie software? jake13 Bioinformatics 5 05-29-2015 09:37 PM
Cufflinks stuck at assembling transcript and initializong abundances step Him26 Bioinformatics 1 12-21-2012 11:41 AM
Could Cufflinks be used for calculating RNA read abundances only? hellsingwyk Core Facilities 0 10-23-2012 08:46 PM

Reply
 
Thread Tools
Old 05-26-2017, 12:53 AM   #1
atonidas
Member
 
Location: Korea

Join Date: May 2017
Posts: 15
Default cannot estimate transcript abundances in Stringtie

Here is the error :
Code:
stringtie e B -p 8 -G '/home/atonidas/RNAseq/chrX_data/samples/stringtie_merged.gtf' -o Alpha1.gtf '/home/atonidas/RNAseq/chrX_data/samples/Alpha1.bam' 
Error: input file e cannot be found!
Aborted (core dumped)
Please advice
atonidas is offline   Reply With Quote
Old 05-26-2017, 01:09 AM   #2
Genetic Librarian
Member
 
Location: Germany

Join Date: May 2017
Posts: 15
Default

well, as stated in the error line the script expects an input file path after the -e option.
Genetic Librarian is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 08:01 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO