Originally posted by huguesparri
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Just for the top surface. Bubbles drive the error rate up higher for the bottom surface. Even so the error rate at 100 bases is generally below 0.5%.
The Sequence Analysis Viewer (SAV) shows >80% of the reads with no errors (counting both surfaces). Again, this is based on aligning phiX reads spiked into 7 lanes of the flowcell to phiX by the instrument software.
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Phillip
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