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Old 10-23-2014, 06:17 PM   #1
seqEQlkw
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Location: Missouri

Join Date: Oct 2014
Posts: 1
Default What reads were assembled by MaSuRCA?

I have assembled several contigs with MaSuRCA 2.3.2. I have two questions:

1) I have one contig that I'm *very* curious how it was built. Is there a way I can tell what reads were joined to make this particular contig? (I suspect one of the libraries was contaminated.)

2) How can I tell how many reads were NOT used in the assembly?

Thanks!
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assembly, celera assembler, de novo assembly, masurca, msrca

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