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Old 01-14-2015, 09:46 AM   #1
Nowlan Freese
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Location: Kannapolis, NC

Join Date: Sep 2014
Posts: 9
Default ChIP-Seq Analysis and Visualization using Galaxy and IGB. (January 28, 11:30am-12pm E

“Focus on a Feature: ChIP-Seq Analysis and Visualization using Galaxy and IGB.”

This Focus on a Feature has finished. The recording can be found here.

The complete Galaxy history can be found here.

Previous Focus on a Feature recordings can be found here.

Program:
1. Aligning ChIP-Seq data in Galaxy.
2. Calling Peaks using MACS in Galaxy.
3. Visualizing ChIP-Seq data in IGB.
4. Comparative visualization with RNA-Seq data in IGB.

Integrated Genome Browser (IGB)
IGB provides an advanced, highly customizable environment for exploring and analyzing large-scale genomic data sets. Using IGB you can visually analyze RNA-Seq, ChIP-Seq, and many other genomic projects. The best part is that IGB can be used to produce publication quality images from genome scale data sets, and is provided FREE.

If you have questions or need assistance, contact us at:

Nowlan Freese nfreese@uncc.edu
Ann Loraine aloraine@uncc.edu

To download and start IGB, go to bioviz.org and select the "Download Now" link. Select the medium or small memory option, depending on amount of available RAM. Once IGB starts, choose Help / Tutorials for a quick introduction to IGB.

**Please share this with students and colleagues**

Last edited by Nowlan Freese; 02-08-2015 at 12:14 PM.
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chip-seq, galaxy, igb, macs, rna-seq

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