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Old 03-11-2010, 03:21 AM   #1
steven
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FYI, here is a -probably non exhaustive- draft list i compiled of SEQanswers citations in scientific peer-reviewed literature:


Year Publication Lead Author Title PubMed Publication Link
2008 Nature Biotechnology Shendure Next-generation DNA sequencing PubMed Link Link
2009 Briefings in Bioinformatics Horner Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing PubMed Link Link
2009 Nature Biotechnology Trapnell How to map billions of short reads onto genomes. PubMed Link Link
2009 Nature Methods McPherson Next-generation gap PubMed Link Link
2009 Nature Methods Flicek Sense from sequence reads: methods for alignment and assembly PubMed Link Link
2009 Nature Reviews Genetics Park ChIP-seq: advantages and challenges of a maturing technology PubMed Link Link
2009 Trends in Ecology & Evolution Rokas Harnessing genomics for evolutionary insights PubMed Link Link
2009 Book: Bioinformatics Matukumalli Sequence Based Gene Expression Analysis n/a Link
2010 Nature Methods Nielsen Visualizing genomes: techniques and challenges n/a Link
2010 The Auk Lerner Prospects for the Use of Next-Generation Sequencing Methods in Ornithology n/a Link

I think it's the first time i see articles referring to an internet forum, or at least so many of them.
Please don't hesitate to complete/correct/comment/etc
cheers,
s.

Last edited by ECO; 03-14-2010 at 12:50 PM. Reason: Adding links and beautification
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Old 03-14-2010, 12:38 PM   #2
ECO
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Compiled all that you found, as well as a couple more, and couldn't resist making it pretty.

Also put it on SEQwiki: The_Greatest_Papers_in_the_World.
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Old 05-17-2010, 05:51 AM   #3
steven
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Two more:

Heng Li and Nils Homer
A survey of sequence alignment algorithms for next-generation sequencing
Briefings in Bioinformatics Advance Access published on May 11, 2010.
Pubmed

Mikael Huss
Introduction into the analysis of high-throughput-sequencing based epigenome data
Briefings in Bioinformatics Advance Access published on May 10, 2010.
Pubmed

Last edited by steven; 05-17-2010 at 05:55 AM. Reason: adding PM links
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Old 09-16-2010, 04:27 PM   #4
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good post for the beginer
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Old 10-25-2010, 03:12 PM   #5
NeuroGenXtics
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Please excuse the shameless self promotion.
Corbett M, Gecz J.
Great expectations: using massively parallel sequencing to solve inherited disorders.
Expert Rev Mol Diagn. 2010 Oct;10(7):833-6.
Pubmed
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Old 02-15-2011, 08:49 AM   #6
steven
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More:

Huttenhower C, Hofmann O (2010)
A Quick Guide to Large-Scale Genomic Data Mining.
PLoS Comput Biol 6(5): e1000779. doi:10.1371/journal.pcbi.1000779

Zheng Z, Advani A, Melefors O, Glavas S, Nordström H, Ye W, Engstrand L, Andersson AF.
Titration-free massively parallel pyrosequencing using trace amounts of starting material. Nucleic Acids Res. 2010 Jul;38(13):e137. Epub 2010 Apr 30. PubMed PMID: 20435675

(added to the wiki )

Last edited by steven; 02-15-2011 at 08:50 AM. Reason: snp
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Old 08-01-2011, 10:52 AM   #8
steven
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By the way, Google Scholar features a nice Alert system.. what about setting up another Newsbot to get an automatic post each time a paper cites "SEQanswers"?
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Old 08-01-2011, 11:04 AM   #9
marcowanger
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Some more

http://www.nature.com/nmeth/journal/...meth.1631.html
http://www.springerlink.com/index/M946150214752254.pdf
http://www.biomedcentral.com/1471-2164/12/382/abstract
http://www.biomedcentral.com/1471-2164/12/46/
http://www.akademiai.com/index/K76G173700718605.pdf

Last edited by marcowanger; 08-01-2011 at 11:37 AM. Reason: mistaken quoted references already listed by steven
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Old 08-01-2011, 11:07 AM   #10
marcowanger
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Quote:
Originally Posted by steven View Post
By the way, Google Scholar features a nice Alert system.. what about setting up another Newsbot to get an automatic post each time a paper cites "SEQanswers"?
It seems it only works for person

http://scholar.google.com/citations?view_op=new_profile
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Old 08-01-2011, 12:23 PM   #11
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Newsbot runs on RSS feeds, which Google (lamely) doesn't provide for Scholar Alerts...but there are several workarounds I will try to get going...

Great list guys, thanks for finding all these!
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