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Old 06-11-2014, 05:59 AM   #1
mmmm
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Default guide tree-mauve

hi all- how could I produce a tree with bootstrap values after carrying out progressive mauve alignment and getting guide tree?
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Old 06-19-2014, 05:44 AM   #2
TiborNagy
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The guide_tree file is a newick tree format, every program could read this format.
I have used R:
Code:
library(ape)
t <- read.tree("mauve.out.guide_tree")
plot(t)
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Old 06-19-2014, 09:56 AM   #3
mmmm
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Quote:
Originally Posted by TiborNagy View Post
The guide_tree file is a newick tree format, every program could read this format.
I have used R:
Code:
library(ape)
t <- read.tree("mauve.out.guide_tree")
plot(t)
Thank you I opened the guide tree file with figtree but the tree does not show bootstrap values??- any suggestions please
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Old 06-19-2014, 09:57 AM   #4
mmmm
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Thank you I opened the guide tree file with figtree but the tree does not show bootstrap values??- any suggestions please
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Old 07-08-2014, 07:27 AM   #5
mmmm
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would figtree show bootstrap values on the guide tree produced by progressive mauve?
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