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Old 07-10-2014, 07:28 AM   #1
chariko
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Location: Spain

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Default Problems with galaxy bedgraph to bigwig

I am trying to convert a bedgraph file ta bigwig file using galaxy (not able to do in linux since the bedGraphToBigWig script runs only in 64 bits and I am running 32 bits version).

I upload my bedgraph file and afterwards my genome file (genome.txt) which looks like the following:
contig1 32486
(name) (number of bases)

When I execute the Wig/bedgraph to bigWIg in galaxy it tells me:

Unspecified genome build, click the pencil icon in the history item to set the genome build.

How can I tell Galaxy my genome build is genome.txt? Is the format of my genome.txt wrong?
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Old 07-10-2014, 07:22 PM   #2
tnabtaf
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Default

A better place to post this question is https://biostar.usegalaxy.org/

You can also search for answers at http://galaxyproject.org/search/usegalaxy/

What you have is known as a custom build in Galaxy. See https://wiki.galaxyproject.org/Learn/CustomGenomes for how to tell Galaxy that that is what it is.
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Old 07-11-2014, 05:26 AM   #3
chariko
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Thanks, IŽll take a look on biostar.
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