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Old 11-08-2014, 06:51 AM   #1
Location: MN

Join Date: Oct 2014
Posts: 29
Default How to view full error messages in Galaxy

Hi this is a really stupid question. I'm working in Galaxy and getting error messages from Cummerbund, but I can't see the full message to fix it.

This is what it shows (below), then it cuts off. Is there a way to view the full message? I've tried clicking it, "view data," "view details," and downloading the results and opening it. Nothing that shows the rest of the error message.

CuffSet instance with: 3 samples 13652 genes 24339 isoforms 16768 TSS 18512 CDS 40956 promoters 50304 splicing 39825 relCDS [1] "dendrogram failed: Error in sqliteExecStatement(con, statement, RS-DBI driver: (error in stateme
skmotay is offline   Reply With Quote
Old 11-08-2014, 11:33 AM   #2
Location: Germany

Join Date: May 2014
Posts: 23

you didn't say where you're seeing this error, but if it is recognized as an error by Galaxy, i.e., you're getting a red dataset in your history panel, you can simply click the bug symbol (just left of the Download icon) to see the message in the main panel.
In general, i.e., also for job runs that Galaxy considers successful, you can see the underlying tool's output by clicking on the View Details icon then following the stdout or stderr links in the main panel.
wolma is offline   Reply With Quote

cummerbund, error message, galaxy

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