SEQanswers

Go Back   SEQanswers > Events / Conferences



Similar Threads
Thread Thread Starter Forum Replies Last Post
ChIP-Seq Analysis and Visualization using Galaxy and IGB. (January 28, 11:30am-12pm E Nowlan Freese Events / Conferences 0 01-14-2015 09:46 AM
Live on-line tutorial using Integrated Genome Browser (November 12, 2014 11:30am-12pm Nowlan Freese Events / Conferences 0 10-30-2014 08:59 AM
Introduction to Integrated Genome Browser (IGB) rhynwa Bioinformatics 0 09-04-2013 05:34 AM
Importing Genome in IGB and Chip Seq data in IGV ayushraman Bioinformatics 1 09-24-2011 05:42 AM

Reply
 
Thread Tools
Old 03-17-2015, 01:52 PM   #1
Nowlan Freese
Junior Member
 
Location: Kannapolis, NC

Join Date: Sep 2014
Posts: 9
Default Visualization of whole genome DNA methylation in IGB (March 25, 11:30am-12pm EST)

“Focus on a Feature: Visualization of whole genome DNA methylation data in IGB.”

This tutorial has ended. You can find the recording here.

To follow along, you can find the data I used in Galaxy here.

You can find previous Focus on a Feature tutorials here.

Program:
1. Intro to generating whole genome bisulfite sequencing (BS-seq).
2. Differential visual analysis of BS-seq data in IGB.
3. Comparative visualization with RNA-Seq data.

Integrated Genome Browser (IGB)
IGB provides an advanced, highly customizable environment for exploring and analyzing large-scale genomic data sets. Using IGB you can visually analyze RNA-Seq, ChIP-Seq, and many other genomic projects. The best part is that IGB can be used to produce publication quality images from genome scale data sets, and is provided FREE.

If you have questions or need assistance, contact us at:

Nowlan Freese nfreese@uncc.edu
Ann Loraine aloraine@uncc.edu

To download and start IGB, go to bioviz.org and select the "Download Now" link.

**Please share this with students and colleagues**

Last edited by Nowlan Freese; 03-25-2015 at 02:32 PM.
Nowlan Freese is offline   Reply With Quote
Reply

Tags
bismark, bs-seq, galaxy, igb, rna-seq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 04:33 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO