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Old 06-30-2015, 04:25 AM   #1
omerfaruk
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Default Multiple Instances of GS Assembler

Hello,

GS Assembler is currently running incrementally in a machine with 1 TB RAM, still taking months since data is 600 GB.

Can I run multiple separate instances for one file at a time at different machines, like 16 files, 16 machines, and then in a way, unify these results?

Best,
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Old 07-02-2015, 03:50 AM   #2
flxlex
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Not directly out of the box. Do you need all that data (what are you assembling)? If you do, can you do digital normalisation, or partioning (e.g., see the khmer package)
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Old 07-10-2015, 04:45 AM   #3
omerfaruk
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I have like 40 files, 3-4 gbs each. Adding one file at a time, incremental, large genome, het.
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Old 08-04-2015, 01:40 AM   #4
flxlex
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What is the total coverage (total sequenced bp divided by genome size)? Your data should be OK for newbler in one go...
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