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Old 07-26-2017, 01:30 AM   #1
Junior Member
Location: UK

Join Date: Jul 2017
Posts: 1
Default RPy issue in Galaxy on Biolinux 8


I am using Galaxy in BioLinux8 and having a consistent issue with RPy e.g.

Traceback (most recent call last):
File "/usr/lib/galaxy-server/tools/plotting/", line 5, in <module>
from rpy import *
File "/usr/lib/python2.7/dist-packages/", line 134, in <module>
RuntimeError: No module named _rpy3030

RPy module can not be imported. Please check if your rpy
installation supports R 3.3.0. If you have multiple R versions
installed, you may need to set RHOME before importing rpy. For

>>> from rpy_options import set_options
>>> set_options(RHOME='c:/progra~1/r/rw2011/')
>>> from rpy import *

As a biologist, could any offer a simple solution to this?

Many thanks,

John Hammond
University of Reading, UK
JH_Reading is offline   Reply With Quote

biolinux8, galaxy, python, rpy

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