SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Repost: tophat-fusion outputs empty result mrfox Bioinformatics 31 10-13-2016 07:03 AM
tophat-fusion-post result empty emilyjia2000 Bioinformatics 40 10-11-2016 06:06 AM
Tophat fusion result.html dashes and duplicates joethar RNA Sequencing 1 08-08-2013 03:01 AM
Question: prioritizing fusion based on tophat result angerusso RNA Sequencing 1 08-08-2013 02:39 AM
tophat-fusion-post result, blast database error fengqi Bioinformatics 3 08-05-2013 06:42 PM

Reply
 
Thread Tools
Old 08-20-2017, 10:34 AM   #1
chxu
Junior Member
 
Location: Michigan

Join Date: Jan 2016
Posts: 1
Default tophat-fusion result

Can I use the accepted_hits.bam of "tophat2 --fusion-search" to calculate the gene expression level?

Usually I just use tophat to map reads to genome, then calculate the gene expression level by the accepted_hits.bam. But when I need to rsearch the fusion transcript, I use the "tophat2 --fusion-search", then I got an accepted_hits.bam, could I use this bam file to calculate the gene expression level? I don't want to map the reads again using tophat2 without --fusion-search.

Thanks!
chxu is offline   Reply With Quote
Reply

Tags
accepted_hits.bam, fusion-search, tophat

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 05:02 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO