I want to make a gff file about the TE in fly, so I can see the repeat position in IGV. I can use repeatmasker, based on the repeat data from repbase file drorep.ref, which contains 238 sequences. I also see there are two precomputed files in flybase website
ftp://flybase.net/genomes/Drosophila...r6.10.fasta.gz
ftp://flybase.net/genomes/Drosophila...r6.10.fasta.gz
I don't know what's the relation between those files. Are the result from repeatmasker less reliable than the fasta files above? Which file should I use if I use the precomputed files?
ftp://flybase.net/genomes/Drosophila...r6.10.fasta.gz
ftp://flybase.net/genomes/Drosophila...r6.10.fasta.gz
I don't know what's the relation between those files. Are the result from repeatmasker less reliable than the fasta files above? Which file should I use if I use the precomputed files?
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