Dear experts,
Is there a database with fully sequenced reference genomes with taxonomy? Better if in one/many fasta-files with taxonomy in headers like
There is 16S/18S rRNA database like arb-silva.de for that, but I couldn't find full genome database.
If such a database does not exists, what is the simplest way to mine this data from other databases (assuming good programming skills)?
Thank you!
Is there a database with fully sequenced reference genomes with taxonomy? Better if in one/many fasta-files with taxonomy in headers like
>Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Escherichia-Shigella;Escherichia coli str. K-12 substr. DH10B
There is 16S/18S rRNA database like arb-silva.de for that, but I couldn't find full genome database.
If such a database does not exists, what is the simplest way to mine this data from other databases (assuming good programming skills)?
Thank you!
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