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02-16-2017, 10:50 AM
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#1 |
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Junior Member
Location: Athens, Ohio Join Date: Jan 2017
Posts: 8
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TopHat/ Cufflinks & ...EdgeR?
Hello
Can't seem to find a definite answer to this: Is EdgeR compatible with Cufflinks? (Im new to this & help is appreciated) Cheers Laura |
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02-16-2017, 11:26 AM
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#2 |
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Member
Location: San Francisco South Bay Area Join Date: Oct 2013
Posts: 20
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edgeR works best with raw counts. You should use tools like featureCounts or HTSeq with it.
Also, please note that there are a lot of newer software tools. Maybe you should take a look at tools like STAR, HISAT, StringTie, Kallisto, etc. to replace TopHat and Cufflinks. Last edited by shunyip; 02-16-2017 at 11:29 AM. |
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