To whom it may concern,
Thanks for the excellent software. I have 8 mouse samples, and get the transcripts for each sample using cufflinks. When I use cuffmerge to merge each sample to one file, I met some mistakes: Just as the attachment, each sample expresses one transcripts named "NM_013633" or "NM_013633_ext", but I lost it in the merged file anf only left the short ones. I hope you can help me! I look forward to your reply!
ps: the attachment is the test data and the REANME file.
the default parameter "--max-bundle-length 3,500,000" is not suitable for mouse data. I advice adjust to "1,000,000,000".
Thanks for your time!
Best,
Guihai Feng
Thanks for the excellent software. I have 8 mouse samples, and get the transcripts for each sample using cufflinks. When I use cuffmerge to merge each sample to one file, I met some mistakes: Just as the attachment, each sample expresses one transcripts named "NM_013633" or "NM_013633_ext", but I lost it in the merged file anf only left the short ones. I hope you can help me! I look forward to your reply!
ps: the attachment is the test data and the REANME file.
the default parameter "--max-bundle-length 3,500,000" is not suitable for mouse data. I advice adjust to "1,000,000,000".
Thanks for your time!
Best,
Guihai Feng
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