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Old 03-26-2013, 06:00 AM   #21
stvos
Junior Member
 
Location: Belgium

Join Date: Aug 2011
Posts: 7
Default Varscan results vs Genomeview

Dear all,
I am using /VarScan/x86_64/2.3.3
VarScan Somatic
I seem to have really big differences in SNP coverages in the SNP output file of Varscan and that of the visualized .bam file in Genomeview (similar to IGV).
Has anyone found out yet what causes this?
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somatic mutations, varscan

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