Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • BioPerl version

    While trying to compile a script with specific Bioperl version dependency I encounter
    ! Couldn't find a $VERSION in prerequisite Bio::Perl
    I have set the PERL5LIB path to point to this latest version uner my .profile

    Please see below:
    perl -MBio::Perl -le 'print Bio::Perl->VERSION;'
    1.006924
    perldoc -l Bio::Perl
    /usr/local/share/perl/5.18.2/Bio/Perl.pm
    perl -V

    ........
    %ENV:
    PERL5LIB="/usr/local/share/perl/5.18.2/Bio/:\/usr/local/share/perl/site_perl/5.18.2/Bio:\/usr/local/share/perl/site_perl"
    @INC:
    /usr/local/share/perl/5.18.2/Bio/
    \/usr/local/share/perl/site_perl/5.18.2/Bio
    \/usr/local/share/perl/site_perl
    /etc/perl
    /usr/local/lib/perl/5.18.2
    /usr/local/share/perl/5.18.2
    /usr/lib/perl5
    /usr/share/perl5
    /usr/lib/perl/5.18
    /usr/share/perl/5.18
    /usr/local/lib/site_perl

    Any help on how I can install properly/set right path to version

  • #2
    it would be helpful if you posted the code where you are checking the version.

    also, it appears that

    print Bio::Perl->VERSION;

    is a method call, while

    print $Bio::Root::Version::VERSION;

    prints the contents of a variable containing the version value. I don't know if this could be causing the issues you're seeing.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Techniques and Challenges in Conservation Genomics
      by seqadmin



      The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

      Avian Conservation
      Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
      03-08-2024, 10:41 AM
    • seqadmin
      The Impact of AI in Genomic Medicine
      by seqadmin



      Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...
      02-26-2024, 02:07 PM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 03-14-2024, 06:13 AM
    0 responses
    34 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-08-2024, 08:03 AM
    0 responses
    72 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-07-2024, 08:13 AM
    0 responses
    82 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-06-2024, 09:51 AM
    0 responses
    68 views
    0 likes
    Last Post seqadmin  
    Working...
    X