Dear users,
I am trying to install cummeRbund library in my R latest version 3
i tried giving
source("http://bioconductor.org/biocLite.R")
biocLite("cummeRbund")
After installing some package it returned with the Warning as
Warning messages:
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘RCurl’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘biomaRt’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘rtracklayer’ had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘GenomicFeatures’ had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘biovizBase’ had non-zero exit status
6: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘Gviz’ had non-zero exit status
7: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘cummeRbund’ had non-zero exit status
I searched in net regarding the issue.
I am sending the Out of following commands
"
sessionInfo()
biocinstallRepos()
"
sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-redhat-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.10.3
loaded via a namespace (and not attached):
[1] tools_3.0.1
>biocinstallRepos()
BioCsoft
"http://bioconductor.org/packages/2.12/bioc"
BioCann
"http://bioconductor.org/packages/2.12/data/annotation"
BioCexp
"http://bioconductor.org/packages/2.12/data/experiment"
BioCextra
"http://bioconductor.org/packages/2.12/extra"
CRAN
"http://cran.fhcrc.org"
Your suggestion are most welcome
Thanks and Regards
sridhar
I am trying to install cummeRbund library in my R latest version 3
i tried giving
source("http://bioconductor.org/biocLite.R")
biocLite("cummeRbund")
After installing some package it returned with the Warning as
Warning messages:
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘RCurl’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘biomaRt’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘rtracklayer’ had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘GenomicFeatures’ had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘biovizBase’ had non-zero exit status
6: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘Gviz’ had non-zero exit status
7: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘cummeRbund’ had non-zero exit status
I searched in net regarding the issue.
I am sending the Out of following commands
"
sessionInfo()
biocinstallRepos()
"
sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-redhat-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.10.3
loaded via a namespace (and not attached):
[1] tools_3.0.1
>biocinstallRepos()
BioCsoft
"http://bioconductor.org/packages/2.12/bioc"
BioCann
"http://bioconductor.org/packages/2.12/data/annotation"
BioCexp
"http://bioconductor.org/packages/2.12/data/experiment"
BioCextra
"http://bioconductor.org/packages/2.12/extra"
CRAN
"http://cran.fhcrc.org"
Your suggestion are most welcome
Thanks and Regards
sridhar
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