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I have several mapped bacterial genomes- where I called the variants and determined their effect using snpEff- but now would like to create a snp tree- How could I combine every strain's variants to get one file containing a comparison between all strains including the reference? (is there a perl script for this). then would like to draw a snp tree?
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This has been asked in the past but there was no specific answer posted: http://seqanswers.com/forums/showthread.php?t=32636
FYI: As you create a new thread check the space above the edit window since SeqAnswers will automatically search the database for previously posted questions/similar topics. -
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