So I get a error when trying to convert my sam to a bam:
samtools view: failed to add PG line to the header
My header seems OK (see below), but I am new at this. How do I fix my headers so my command generates a bam file
samtools view -bS joelle.sam > joelle.bam
@SQ SN:utg000001l LN:5073047
@SQ SN:utg000002l LN:24568116
@SQ SN:utg000003l LN:22903238
@SQ SN:utg000004l LN:14007477
@SQ SN:utg000005l LN:8330460
@SQ SN:utg000006l LN:20648589
samtools view: failed to add PG line to the header
My header seems OK (see below), but I am new at this. How do I fix my headers so my command generates a bam file
samtools view -bS joelle.sam > joelle.bam
@SQ SN:utg000001l LN:5073047
@SQ SN:utg000002l LN:24568116
@SQ SN:utg000003l LN:22903238
@SQ SN:utg000004l LN:14007477
@SQ SN:utg000005l LN:8330460
@SQ SN:utg000006l LN:20648589