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Old 08-22-2011, 05:37 AM   #1
peterbengkui
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Location: atlanta

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Question Read Intensity Figure

Hi All,

Sorry to bother you guys, but I'm begging for help on creating a kind of intensity figure (if i'm calling name right). Here is a sample figure. Please be so so kind to tell me what the figure is, and how to create. More specifically, what the vertical axis really is.

Thanks a million!
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File Type: pdf intensity plot.pdf (109.5 KB, 57 views)
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Old 08-22-2011, 06:36 AM   #2
volks
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which paper is this?

the figure shows the intensity of ChIP-seq datasets for different genes (y, sorted by P-value). x shows the genomic window +/-5kb of the transcription start site.

probably created in R and illustrator.
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Old 08-22-2011, 08:55 AM   #3
peterbengkui
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Dear Volks,

thanks a lot for prompt reply. Here's the link of the paper. Do you think the heatmap function of R can do the job?

Thanks a lot!

Best,
Peter

http://www.ncbi.nlm.nih.gov/pubmed?t...20stem%20cells.
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