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There is also the Entrez Utilities Fetch command, EFetch, which is probably using the same thing once it gets to the NCBI;
Libraries like BioPerl and Biopython have an API to try and make this more friendly.
Also have a look at TogoWS - especially if based in Asia, as their URL API is really simple to use:
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wget 'https://www.ncbi.nlm.nih.gov/search/api/sequence/${accession}/?report=fasta'
works nowadays, e.g.:
wget -O NC_001416.1.fasta 'https://www.ncbi.nlm.nih.gov/search/api/sequence/NC_001416.1/?report=fasta'
downloads the lambda phage: https://www.ncbi.nlm.nih.gov/nuccore/9626243
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by seqadmin
Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...-
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03-22-2024, 06:39 AM -
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by seqadmin
The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.
Avian Conservation
Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...-
Channel: Articles
03-08-2024, 10:41 AM -
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