Hello everyone,
I would like to annotate my SNPs. After annotation I would like to have a table with additional information like position (exon, intron, UTR,...), dbSNP-ID, SIFT/PolyPhen/PhyloP-score, gene (for exonic SNPs),....
I tried to use Annovar for that. But unfortunally I received two tables after each step and I couldn't use these tables for the next step, so that it wasn't possible to have for example the position/region together with the SIFT-score in one table or i.e. the Sift- and Polyphen-score in one table.
Is there any possiblity to add just the information to the table and use the resulting table for the next step?
Thanks for your help
I would like to annotate my SNPs. After annotation I would like to have a table with additional information like position (exon, intron, UTR,...), dbSNP-ID, SIFT/PolyPhen/PhyloP-score, gene (for exonic SNPs),....
I tried to use Annovar for that. But unfortunally I received two tables after each step and I couldn't use these tables for the next step, so that it wasn't possible to have for example the position/region together with the SIFT-score in one table or i.e. the Sift- and Polyphen-score in one table.
Is there any possiblity to add just the information to the table and use the resulting table for the next step?
Thanks for your help
Comment