Hi everyone, my question:
How to determine the optimal k value (in assembling using k-mer)?
The k-mer length we used includes 40, 50, 60 and 70. We have the number of clusters and singletons produced. How do I know which one is the best to choose to proceed with assembly with MIRA?
I am new in bioinformatics, please let me know if the information I've given is not clear. Thanks for your help!
How to determine the optimal k value (in assembling using k-mer)?
The k-mer length we used includes 40, 50, 60 and 70. We have the number of clusters and singletons produced. How do I know which one is the best to choose to proceed with assembly with MIRA?
I am new in bioinformatics, please let me know if the information I've given is not clear. Thanks for your help!
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