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Old 11-30-2011, 06:31 AM   #1
Location: Milano, Italy

Join Date: Aug 2011
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Default Script to convert 75x35 bp to 50x35 bp reads SOLiD 5500

Dear All,
has someone developed a script to convert SOLiD 5500xl output (xsq) from 75x35bp to 50x35bp. In other words to cut last 25 bp in every read before alignement.

paolo.kunder is offline   Reply With Quote
Old 11-30-2011, 07:27 AM   #2
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Location: Purdue University, West Lafayette, Indiana

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If you are using BioScope/LifeScope, I am pretty sure there is a parameter you can give that tells the mapping engine to only use the first X bases.

pmiguel is offline   Reply With Quote

5500xl, 75x35, solid, xsq

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