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Old 11-30-2011, 06:31 AM   #1
paolo.kunder
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Location: Milano, Italy

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Default Script to convert 75x35 bp to 50x35 bp reads SOLiD 5500

Dear All,
has someone developed a script to convert SOLiD 5500xl output (xsq) from 75x35bp to 50x35bp. In other words to cut last 25 bp in every read before alignement.

Thanks,
Paolo
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Old 11-30-2011, 07:27 AM   #2
pmiguel
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Location: Purdue University, West Lafayette, Indiana

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If you are using BioScope/LifeScope, I am pretty sure there is a parameter you can give that tells the mapping engine to only use the first X bases.

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Phillip
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