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Hi I am looking for a program that can align all miRNA variants or isomirs to the precursers and produce a map like below. Can you please suggest a program for that? thanks in advance.
PHP Code:
>mmu-let-7f-2
total read count 2702595
mmu-let-7f-5p read count 2702589
remaining read count 6
exp fffffff5555555555555555555555fffffffffffffffffffffffffffffff
pri_seq ugugggaugagguaguagauuguauaguuuuagggucauaccccaucuuggagauaacua
pri_struct ...((((((.((((...((((.((......)).)))).)))).))))))........... #MM
a2b_26359701_x1 ....gUaugagguaguagauuguaua.................................. 1
a2b_27273292_x1 .....Uaugagguaguagauuguau................................... 1
a2b_24052491_x48 .....gUugagguaguagauuguaua.................................. 1
a2b_26138224_x2 .....Aaugagguaguagauuguauagu................................ 1
a2b_27325497_x1 .....Uaugagguaguagauuguauagu................................ 1
a2b_26941374_x1 .....Aaugagguaguagauuguauaguu............................... 1