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09-28-2012, 02:45 PM
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#1 |
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Junior Member
Location: Houston, TX Join Date: Mar 2012
Posts: 1
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TCGA Level 3 RNASeq data duplicate rows for a gene
Hi,
I've downloaded RNASeq level 3 data from TCGA, but notice they have duplicate rows for some genes. For example: ANKRD20A3|441425|1of3_calculated 2 0.0378 0.003 ANKRD20A3|441425|2of3_calculated 5 0.0926 0.0075 ANKRD20A3|441425|3of3_calculated 0 0 0 Anyone knows why and how should I process it? I would like to have one gene expression value (gene counts or RPKM) for one gene. Thanks. |
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04-06-2013, 07:53 AM
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#2 |
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Junior Member
Location: Brazil, Ribeirão Preto Join Date: Sep 2012
Posts: 5
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I am having the same issue using Mutation Annotation Format files (.maf). The genes are replicated in rows but I don't know why?
Can anyone help in this issue? Thanks |
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