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Old 09-28-2012, 02:45 PM   #1
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Location: Houston, TX

Join Date: Mar 2012
Posts: 1
Default TCGA Level 3 RNASeq data duplicate rows for a gene


I've downloaded RNASeq level 3 data from TCGA, but notice they have duplicate rows for some genes. For example:
ANKRD20A3|441425|1of3_calculated 2 0.0378 0.003
ANKRD20A3|441425|2of3_calculated 5 0.0926 0.0075
ANKRD20A3|441425|3of3_calculated 0 0 0

Anyone knows why and how should I process it? I would like to have one gene expression value (gene counts or RPKM) for one gene.

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Old 04-06-2013, 07:53 AM   #2
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Location: Brazil, Ribeirão Preto

Join Date: Sep 2012
Posts: 5

I am having the same issue using Mutation Annotation Format files (.maf). The genes are replicated in rows but I don't know why?
Can anyone help in this issue?
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